ingewortel/artistoo Artistoo

CPM implementation in pure javascript (Node module)

#33 (all)
JavaScript (change)
24 seconds
5 days ago

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In case the documentation changed, it is shown here.

#33 npm package dependency upgrade [e4cab962] 24 seconds 5 days ago
6 builds omitted (no changes to documentation).
#23 version no up; edit folder name in stochasticCorrector node script [49d23fbd] 20 seconds about 1 month ago
A
CPMEvol#cellDeath E
A
CPMEvol#getCell E
A
Constraint#cellParameter E
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Constraint#paramOfCell E
A
Constraint#paramOfKind E
A
CPMEvol#makeNewCellID E
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Divider#birth E
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CPMEvol#birth E
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CPMEvol#reset E
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Cell#birth E
Show 3 low priority objects ...
3 builds omitted (no changes to documentation).
#15 added example to docs on coloring cells by ID [815e74a7] 23 seconds 3 months ago
A
Canvas#drawCells has improved (was A) E
#14 remove colon from filename [5805f352] 24 seconds 3 months ago
B
GridManipulator#changeKind has gotten worse (was A) E
A
GridManipulator#makePlane has gotten worse (was A) E
A
Grid#correctPosition E
A
GridManipulator#assignCellPixels E
A
GridManipulator#makeCircle E
A
GridManipulator#makeLine E
A
GridManipulator#makeBox E
A
ArtistooWriter#setModelConfig E
A
Simulation#addConstraints E
A
CPM#reset E
U
MorpheusImport#setPreferredDirectionConstraintForKind E
U
MorpheusImport#setConnectivityConstraintForKind E
U
MorpheusWriter#setPreferredDirectionConstraint E
U
MorpheusImport#setPersistenceConstraintForKind E
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MorpheusImport#setPerimeterConstraintForKind E
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MorpheusImport#setActivityConstraintForKind E
U
MorpheusImport#setBarrierConstraintForKind E
U
MorpheusImport#setVolumeConstraintForKind E
U
MorpheusWriter#multipleConstraintsWarning E
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MorpheusWriter#setConnectivityConstraint E
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ModelDescription#getConstraintParameter E
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MorpheusWriter#setPersistenceConstraint E
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MorpheusImport#unknownConstraintWarning E
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MorpheusWriter#setChemotaxisConstraint E
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MorpheusImport#readCoordinateAttribute E
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ModelDescription#methodOverwriteError E
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MorpheusWriter#setPerimeterConstraint E
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ModelDescription#setGridConfiguration E
U
ArtistooWriter#addConstraintToConfig E
U
ModelDescription#initDimensionVector E
U
MorpheusWriter#setActivityConstraint E
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ModelDescription#initCellKindVector E
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MorpheusWriter#toMorpheusCoordinate E
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MorpheusWriter#writeCellPopulations E
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ModelDescription#initCellKindMatrix E
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ArtistooImport#setGridConfiguration E
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MorpheusImport#setGridConfiguration E
U
MorpheusWriter#setBarrierConstraint E
U
MorpheusImport#setAdhesionMorpheus E
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MorpheusWriter#setVolumeConstraint E
U
MorpheusImport#readMorpheusLattice E
U
ArtistooWriter#customMethodsString E
U
MorpheusImport#readVectorAttribute E
U
ModelDescription#setCellKindNames E
U
ModelDescription#setGridGeometry E
U
ArtistooWriter#setInitialisation E
U
ArtistooImport#readPixelsByCell E
U
ModelDescription#setConstraints E
U
MorpheusImport#setCellKindNames E
U
MorpheusImport#setCellPixelList E
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ArtistooImport#setCellKindNames E
U
MorpheusImport#parameterFromXML E
U
MorpheusWriter#writeDescription E
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ArtistooWriter#writeBasicScript E
U
MorpheusWriter#writeConstraints E
U
ArtistooWriter#addCustomMethod E
U
MorpheusWriter#setAttributesOf E
U
Writer#recursiveArrayStringFix E
U
ModelDescription#setCPMGeneral E
U
ModelDescription#hasConstraint E
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ModelDescription#getConstraint E
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ModelDescription#addConstraint E
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ModelDescription#getKindIndex E
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MorpheusImport#setInitObjects E
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ArtistooImport#setConstraints E
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MorpheusImport#setConstraints E
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MorpheusWriter#writeCellTypes E
U
ArtistooWriter#addInitializer E
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ModelDescription#setModelInfo E
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ModelDescription#setTimeInfo E
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MorpheusImport#addInitObject E
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MorpheusImport#setInitCircle E
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ArtistooImport#setCPMGeneral E
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MorpheusWriter#writeAnalysis E
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ArtistooWriter#writeHTMLBody E
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ModelDescription#setGridInfo E
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MorpheusImport#addInitCircle E
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ModelDescription#getKindName E
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MorpheusImport#setCPMGeneral E
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ArtistooWriter#writeHTMLHead E
U
ModelDescription#callerName E
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MorpheusImport#setModelInfo E
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MorpheusImport#toCoordinate E
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ArtistooImport#setModelInfo E
U
ArtistooImport#setTimeInfo E
U
ArtistooImport#setGridInfo E
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ArtistooWriter#writeConfig E
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MorpheusWriter#setAdhesion E
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MorpheusImport#setGridInfo E
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MorpheusImport#setTimeInfo E
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MorpheusWriter#writeGlobal E
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MorpheusImport#readXMLTag E
U
MorpheusWriter#writeSpace E
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MorpheusWriter#attachNode E
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MorpheusWriter#formatXml E
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MorpheusWriter#writeTime E
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MorpheusImport#getXMLTag E
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ArtistooWriter#writeHTML E
U
MorpheusWriter#addNodeTo E
U
ArtistooWriter#writeNode E
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MorpheusWriter#writeXML E
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MorpheusWriter#makeNode E
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MorpheusWriter#writeCPM E
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MorpheusWriter#setNode E
U
MorpheusWriter#initXML E
U
ModelDescription#build E
U
CPM#getAllConstraints E
U
MorpheusWriter#write E
U
ArtistooWriter#write E
U
Writer#objToString E
U
Writer#htmlNewLine E
U
Writer#stringWrap E
U
Writer#writeLog E
U
Writer#write E
Show 6 low priority objects ...
10 builds omitted (no changes to documentation).
#3 old docs files removed [b82fc811] 19 seconds about 1 year ago
A
Grid#checkOnGrid E
A
PerimeterConstraint#initializePerimeters E
#2 docs manual update [cbb4833b] 19 seconds about 1 year ago
A
SoftConnectivityConstraint#postSetpixListener Ne
A
ConnectivityConstraint#postSetpixListener Ne
A
ActivityConstraint#postSetpixListener Ne
A
PersistenceConstraint#setDirection Ne
A
GridBasedModel#setpixi Ne
A
GridBasedModel#setpix Ne
A
CPM#setCellKind Ne
A
Grid#setpixi Ne
A
CPM#setpixi Ne
A
Grid#setpix Ne
A
Adhesion#J Ne
A
Adhesion#H Ne
A
ParameterChecker#confCheckStructureKindMatrix E
A
ParameterChecker#confCheckStructureKindArray E
A
ParameterChecker#confCheckStructureSingle E
A
ParameterChecker#confCheckStructure E
A
GridManipulator#seedCellsInCircle E
A
ParameterChecker#isNonNegative E
A
ParameterChecker#isProbability E
A
ParameterChecker#isCoordinate E
A
ParameterChecker#isBoolean E
A
GridManipulator#seedCellAt E
A
ParameterChecker#isNumber E
A
GridBasedModel#getStat E
A
Grid3D#p2i E
A
Grid2D#p2i E
A
Grid2D#i2p E
A
Grid3D#i2p E
A
ParameterChecker#isString E
A
SoftConnectivityConstraint#updateBorderPixels E
A
ConnectivityConstraint#updateBorderPixels E
A
PerimeterConstraint#postSetpixListener E
A
ParameterChecker#confCheckValueType E
A
ActivityConstraint#activityAtArith E
A
ActivityConstraint#activityAtGeom E
A
PersistenceConstraint#normalize E
A
VolumeConstraint#volconstraint E
A
ActivityConstraint#pxact E
A
GridBasedModel#cellKind E
A
CPM#updateborderneari E
A
GridBasedModel#pixt E
A
CoarseGrid#addValue E
A
Grid#applyLocally E
A
DiceSet#contains E
A
Grid2D#gradienti E
A
CoarseGrid#pixt E
A
Grid#laplaciani E
A
Grid#multiplyBy E
A
Grid#gradienti E
A
Grid#diffusion E
A
DiceSet#insert E
A
DiceSet#remove E
A
Grid#laplacian E
A
CPM#getVolume E
A
Grid#gradient E
A
CPM#cellKind E
A
Grid#neighi E
A
Grid#pixti E
A
Grid#neigh E
A
Grid#pixt E
A
Grid#p2i E
A
CPM#pixt E
A
Grid#i2p E
A
CPM#add E
A
GridBasedModel#neigh E
A
Grid2D#neighNeumanni E
A
Grid#neighNeumanni E
A
Grid2D#neighi E
A
Grid3D#neighi E
B
Canvas#drawActivityValues E
B
PersistenceConstraint#sampleNorm E
B
PersistenceConstraint#randDir E
B
Canvas#drawFieldContour E
B
Canvas#drawField E
A
ParameterChecker#confCheckPresenceOf E
A
GridManipulator#changeKind E
A
GridManipulator#divideCell E
A
GridManipulator#makePlane E
A
Grid3D#pixelsi E
A
Grid2D#pixelsi E
A
Grid3D#pixels E
A
Grid2D#pixels E
A
ParameterChecker#confCheckParameter E
A
ConnectedComponentsByCellBorder#connectedComponentsOfCellBorder E
A
SoftConnectivityConstraint#connectedComponentsOfCellBorder E
A
ConnectivityConstraint#connectedComponentsOfCellBorder E
A
SoftLocalConnectivityConstraint#connectedComponentsOf E
A
ConnectedComponentsByCell#connectedComponentsOfCell E
A
CentroidsWithTorusCorrection#computeCentroidOfCell E
A
LocalConnectivityConstraint#connectedComponentsOf E
A
SoftConnectivityConstraint#connectedComponentsOf E
A
SoftLocalConnectivityConstraint#checkConnected E
A
ConnectivityConstraint#connectedComponentsOf E
A
SoftLocalConnectivityConstraint#confChecker E
A
ActivityMultiBackground#setBackgroundVoxels E
A
LocalConnectivityConstraint#checkConnected E
A
SoftConnectivityConstraint#localConnected E
A
SoftConnectivityConstraint#checkConnected E
A
PreferredDirectionConstraint#confChecker E
A
LocalConnectivityConstraint#confChecker E
A
ConnectedComponentsByCellBorder#compute E
A
SoftConnectivityConstraint#connectivity E
A
SoftLocalConnectivityConstraint#deltaH E
A
SoftConnectivityConstraint#confChecker E
A
ConnectivityConstraint#localConnected E
A
HardVolumeRangeConstraint#confChecker E
A
AttractionPointConstraint#confChecker E
A
LocalConnectivityConstraint#fulfilled E
A
ConnectivityConstraint#checkConnected E
A
PersistenceConstraint#postMCSListener E
A
CentroidsWithTorusCorrection#compute E
A
CellNeighborList#getNeighborsOfCell E
A
ParameterChecker#confCheckCellKinds E
A
PreferredDirectionConstraint#deltaH E
A
ActivityMultiBackground#confChecker E
A
HardVolumeRangeConstraint#fulfilled E
A
ActivityConstraint#postMCSListener E
A
ConnectivityConstraint#confChecker E
A
PersistenceConstraint#confChecker E
A
SoftConnectivityConstraint#deltaH E
A
ChemotaxisConstraint#deltaHCoarse E
A
BorderConstraint#setBarrierVoxels E
A
ConnectedComponentsByCell#compute E
A
AttractionPointConstraint#deltaH E
A
ConnectivityConstraint#fulfilled E
A
ChemotaxisConstraint#confChecker E
A
Centroids#computeCentroidOfCell E
A
PerimeterConstraint#confChecker E
A
ChemotaxisConstraint#checkField E
A
ActivityMultiBackground#deltaH E
A
ActivityConstraint#confChecker E
A
BarrierConstraint#confChecker E
A
Simulation#addGridManipulator E
A
PersistenceConstraint#deltaH E
A
BorderConstraint#confChecker E
A
VolumeConstraint#confChecker E
A
ChemotaxisConstraint#deltaH E
A
BarrierConstraint#fulfilled E
A
Simulation#postMCSListener E
A
CPM#cellBorderPixelIndices E
A
PerimeterConstraint#deltaH E
A
BorderPixelsByCell#compute E
A
BorderConstraint#fulfilled E
A
ActivityConstraint#deltaH E
A
Simulation#initializeGrid E
A
Canvas#drawOnCellBorders E
A
Simulation#createOutputs E
A
Simulation#toggleRunning E
A
GridManipulator#seedCell E
A
HardConstraint#fulfilled E
A
CellNeighborList#compute E
A
GridBasedModel#timeStep E
A
VolumeConstraint#deltaH E
A
Constraint#confChecker E
A
GridBasedModel#cellIDs E
A
Simulation#drawCanvas E
A
GridBasedModel#random E
A
SoftConstraint#deltaH E
A
Connectedness#compute E
A
Canvas#drawCellsOfId E
A
CPM#cellBorderPixels E
A
Simulation#runBurnin E
A
Adhesion#confChecker E
A
Simulation#addCanvas E
A
PixelsByCell#compute E
A
Simulation#drawOnTop E
A
Simulation#drawBelow E
A
Simulation#logStats E
A
Canvas#drawPixelSet E
A
CPM#monteCarloStep E
A
GridBasedModel#ran E
A
Canvas#setCanvasId E
A
Grid#pixelsBuffer E
A
CPM#makeNewCellID E
A
Centroids#compute E
A
Canvas#drawCells E
A
Simulation#step E
A
Adhesion#deltaH E
A
Canvas#writePNG E
A
DiceSet#sample E
A
Canvas#context E
A
Simulation#run E
A
CPM#cellPixels E
A
Stat#compute E
A
Grid#pixelsi E
A
CPM#timeStep E
A
CA#timeStep E
A
Grid#pixels E
A
CPM#docopy E
A
CPM#deltaH E
A
Canvas#drawCellBorders E
A
CPM#getConstraint E
B
Canvas#clear E
B
Connectedness#connectednessOfCell E
B
GridManipulator#killCell E
Show 55 low priority objects ...
#1 docs manual update [cbb4833b] 24 seconds about 1 year ago
A
SoftConnectivityConstraint#postSetpixListener Ne
A
ConnectivityConstraint#postSetpixListener Ne
A
ActivityConstraint#postSetpixListener Ne
A
PersistenceConstraint#setDirection Ne
A
GridBasedModel#setpixi Ne
A
GridBasedModel#setpix Ne
A
CPM#setCellKind Ne
A
Grid#setpixi Ne
A
CPM#setpixi Ne
A
Grid#setpix Ne
A
Adhesion#J Ne
A
Adhesion#H Ne
A
ParameterChecker#confCheckStructureKindMatrix E
A
ParameterChecker#confCheckStructureKindArray E
A
ParameterChecker#confCheckStructureSingle E
A
ParameterChecker#confCheckStructure E
A
GridManipulator#seedCellsInCircle E
A
ParameterChecker#isNonNegative E
A
ParameterChecker#isProbability E
A
ParameterChecker#isCoordinate E
A
ParameterChecker#isBoolean E
A
GridManipulator#seedCellAt E
A
ParameterChecker#isNumber E
A
GridBasedModel#getStat E
A
Grid3D#p2i E
A
Grid2D#p2i E
A
Grid2D#i2p E
A
Grid3D#i2p E
A
ParameterChecker#isString E
A
SoftConnectivityConstraint#updateBorderPixels E
A
ConnectivityConstraint#updateBorderPixels E
A
PerimeterConstraint#postSetpixListener E
A
ParameterChecker#confCheckValueType E
A
ActivityConstraint#activityAtArith E
A
ActivityConstraint#activityAtGeom E
A
PersistenceConstraint#normalize E
A
VolumeConstraint#volconstraint E
A
ActivityConstraint#pxact E
A
GridBasedModel#cellKind E
A
CPM#updateborderneari E
A
GridBasedModel#pixt E
A
CoarseGrid#addValue E
A
Grid#applyLocally E
A
DiceSet#contains E
A
Grid2D#gradienti E
A
CoarseGrid#pixt E
A
Grid#laplaciani E
A
Grid#multiplyBy E
A
Grid#gradienti E
A
Grid#diffusion E
A
DiceSet#insert E
A
DiceSet#remove E
A
Grid#laplacian E
A
CPM#getVolume E
A
Grid#gradient E
A
CPM#cellKind E
A
Grid#neighi E
A
Grid#pixti E
A
Grid#neigh E
A
Grid#pixt E
A
Grid#p2i E
A
CPM#pixt E
A
Grid#i2p E
A
CPM#add E
A
GridBasedModel#neigh E
A
Grid2D#neighNeumanni E
A
Grid#neighNeumanni E
A
Grid2D#neighi E
A
Grid3D#neighi E
B
Canvas#drawActivityValues E
B
PersistenceConstraint#sampleNorm E
B
PersistenceConstraint#randDir E
B
Canvas#drawFieldContour E
B
Canvas#drawField E
A
ParameterChecker#confCheckPresenceOf E
A
GridManipulator#changeKind E
A
GridManipulator#divideCell E
A
GridManipulator#makePlane E
A
Grid3D#pixelsi E
A
Grid2D#pixelsi E
A
Grid3D#pixels E
A
Grid2D#pixels E
A
ParameterChecker#confCheckParameter E
A
ConnectedComponentsByCellBorder#connectedComponentsOfCellBorder E
A
SoftConnectivityConstraint#connectedComponentsOfCellBorder E
A
ConnectivityConstraint#connectedComponentsOfCellBorder E
A
SoftLocalConnectivityConstraint#connectedComponentsOf E
A
ConnectedComponentsByCell#connectedComponentsOfCell E
A
CentroidsWithTorusCorrection#computeCentroidOfCell E
A
LocalConnectivityConstraint#connectedComponentsOf E
A
SoftConnectivityConstraint#connectedComponentsOf E
A
SoftLocalConnectivityConstraint#checkConnected E
A
ConnectivityConstraint#connectedComponentsOf E
A
SoftLocalConnectivityConstraint#confChecker E
A
ActivityMultiBackground#setBackgroundVoxels E
A
LocalConnectivityConstraint#checkConnected E
A
SoftConnectivityConstraint#localConnected E
A
SoftConnectivityConstraint#checkConnected E
A
PreferredDirectionConstraint#confChecker E
A
LocalConnectivityConstraint#confChecker E
A
ConnectedComponentsByCellBorder#compute E
A
SoftConnectivityConstraint#connectivity E
A
SoftLocalConnectivityConstraint#deltaH E
A
SoftConnectivityConstraint#confChecker E
A
ConnectivityConstraint#localConnected E
A
HardVolumeRangeConstraint#confChecker E
A
AttractionPointConstraint#confChecker E
A
LocalConnectivityConstraint#fulfilled E
A
ConnectivityConstraint#checkConnected E
A
PersistenceConstraint#postMCSListener E
A
CentroidsWithTorusCorrection#compute E
A
CellNeighborList#getNeighborsOfCell E
A
ParameterChecker#confCheckCellKinds E
A
PreferredDirectionConstraint#deltaH E
A
ActivityMultiBackground#confChecker E
A
HardVolumeRangeConstraint#fulfilled E
A
ActivityConstraint#postMCSListener E
A
ConnectivityConstraint#confChecker E
A
PersistenceConstraint#confChecker E
A
SoftConnectivityConstraint#deltaH E
A
ChemotaxisConstraint#deltaHCoarse E
A
BorderConstraint#setBarrierVoxels E
A
ConnectedComponentsByCell#compute E
A
AttractionPointConstraint#deltaH E
A
ConnectivityConstraint#fulfilled E
A
ChemotaxisConstraint#confChecker E
A
Centroids#computeCentroidOfCell E
A
PerimeterConstraint#confChecker E
A
ChemotaxisConstraint#checkField E
A
ActivityMultiBackground#deltaH E
A
ActivityConstraint#confChecker E
A
BarrierConstraint#confChecker E
A
Simulation#addGridManipulator E
A
PersistenceConstraint#deltaH E
A
BorderConstraint#confChecker E
A
VolumeConstraint#confChecker E
A
ChemotaxisConstraint#deltaH E
A
BarrierConstraint#fulfilled E
A
Simulation#postMCSListener E
A
CPM#cellBorderPixelIndices E
A
PerimeterConstraint#deltaH E
A
BorderPixelsByCell#compute E
A
BorderConstraint#fulfilled E
A
ActivityConstraint#deltaH E
A
Simulation#initializeGrid E
A
Canvas#drawOnCellBorders E
A
Simulation#createOutputs E
A
Simulation#toggleRunning E
A
GridManipulator#seedCell E
A
HardConstraint#fulfilled E
A
CellNeighborList#compute E
A
GridBasedModel#timeStep E
A
VolumeConstraint#deltaH E
A
Constraint#confChecker E
A
GridBasedModel#cellIDs E
A
Simulation#drawCanvas E
A
GridBasedModel#random E
A
SoftConstraint#deltaH E
A
Connectedness#compute E
A
Canvas#drawCellsOfId E
A
CPM#cellBorderPixels E
A
Simulation#runBurnin E
A
Adhesion#confChecker E
A
Simulation#addCanvas E
A
PixelsByCell#compute E
A
Simulation#drawOnTop E
A
Simulation#drawBelow E
A
Simulation#logStats E
A
Canvas#drawPixelSet E
A
CPM#monteCarloStep E
A
GridBasedModel#ran E
A
Canvas#setCanvasId E
A
Grid#pixelsBuffer E
A
CPM#makeNewCellID E
A
Centroids#compute E
A
Canvas#drawCells E
A
Simulation#step E
A
Adhesion#deltaH E
A
Canvas#writePNG E
A
DiceSet#sample E
A
Canvas#context E
A
Simulation#run E
A
CPM#cellPixels E
A
Stat#compute E
A
Grid#pixelsi E
A
CPM#timeStep E
A
CA#timeStep E
A
Grid#pixels E
A
CPM#docopy E
A
CPM#deltaH E
A
Canvas#drawCellBorders E
A
CPM#getConstraint E
B
Canvas#clear E
B
Connectedness#connectednessOfCell E
B
GridManipulator#killCell E
Show 55 low priority objects ...

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